Salter, JF, RT Brumfield, and BC Faircloth. An island "endemic" born out of hybridization between introduced lineages. Submitted. Preprint DOI: https://doi.org/10.1101/2022.09.14.507826.
Salter, JF, PA Hosner, WLE Tsai, JE McCormack, EL Braun, RT Kimball, RT Brumfield, and BC Faircloth. Historical specimens and the limits of subspecies phylogenomics in the New World quail (Odontophoridae). In Press, Molecular Phylogenetics & Evolution. DOI: 10.1016/j.ympev.2022.107559.
Del-Rio G, MJ Mutchler, B Costa, AE Hiller, B Matinata, JF Salter, LF Silveira, M Rego, and DC Schmitt. 2021. Birds of the Juruá River: extensive várzea forest as a barrier to terra firme birds. Journal of Ornithology 162:565-577. DOI: 10.1007/s10336-020-01850-0.
Krabbe NK, TS Schulenberg, KV Rosenberg, TJ Davis, GH Rosenberg, PA Hosner, DF Lane, MJ Andersen, MB Robbins, CD Cadena, T Valqui, JF Salter, AJ Spencer, F Angulo, and J Fjeldså. 2020. Untangling cryptic avian diversity in the High Andes: revision of the Scytalopus [magellanicus] complex (Rhinocryptidae) in Peru reveals three new species. The Auk: Ornithological Advances 137:ukaa003. DOI: 10.1093/auk/ukaa003
Salter, JF, CH Oliveros, PA Hosner, JD Manthey, MB Robbins, RG Moyle, RT Brumfield, and BC Faircloth. 2020. Extensive paraphyly in the typical owl family (Strigidae). The Auk: Ornithological Advances 137:1–15. DOI: 10.1093/auk/ukz070. This paper was selected as Editor’s Choice. Read the post I wrote about this project for the AOS blog.
Salter, JF, O Johnson, NJ Stafford, III, WF Herrin, D Schilling, C Cedotal, RT Brumfield, and BC Faircloth. 2019. A highly contiguous reference genome for Northern Bobwhite (Colinus virginianus). G3 9:3929–3932. DOI: 10.1534/g3.119.400609
Alvarez, S, JF Salter, JE McCormack, and B Mila. 2016. Speciation in mountain refugia: phylogeography and demographic history of the pine siskin and black-capped siskin complex. Journal of Avian Biology 47:335–345. DOI: 10.1111/jav.00814